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1

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Truong, Duy Tin, Franzosa, Eric A, Tickle, Timothy L, Scholz, Matthias, Weingart, George, Pasolli, Edoardo, Tett, Adrian, Huttenhower, Curtis, Segata, Nicola

Journal:

Year:

2015

Language:

english

File:

PDF, 762 KB

english, 2015

2

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

Li, Bo, Gould, Joshua, Yang, Yiming, Sarkizova, Siranush, Tabaka, Marcin, Ashenberg, Orr, Rosen, Yanay, Slyper, Michal, Kowalczyk, Monika S., Villani, Alexandra-ChloÃ©, Tickle, Timothy, Hacohen, Nir,

Journal:

Year:

2020

File:

PDF, 8.93 MB

2020

3

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

Xochitl C Morgan, Timothy L Tickle, Harry Sokol, Dirk Gevers, Kathryn L Devaney, Doyle V Ward, Joshua A Reyes, Samir A Shah, Neal LeLeiko, Scott B Snapper, Athos Bousvaros, Joshua Korzenik, Bruce E Sa

Journal:

Year:

2012

Language:

english

File:

PDF, 553 KB

english, 2012

4

190 Functional Aspects of the Intestinal Microbiome in Inflammatory Bowel Disease

Harry Sokol, Timothy L. Tickle, Joshua R. Korzenik, Bruce E. Sands, Ramnik J. Xavier, Curtis Huttenhower

Journal:

Gastroenterology

Year:

2012

Language:

english

File:

PDF, 108 KB

english, 2012

5

Towards the uniform distribution of nullPvalues on Affymetrix microarrays

Anthony A Fodor, Timothy L Tickle, Christine Richardson

Journal:

Year:

2007

Language:

english

File:

PDF, 6.81 MB

english, 2007

6

Two-stage microbial community experimental design

Tickle, Timothy L, Segata, Nicola, Waldron, Levi, Weingart, Uri, Huttenhower, Curtis

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 1.68 MB

english, 2013

7

78 Host Ileal APOA1 and DUOX2 Co-Expression Modules Are Associated With Microbial Shifts and Clinical Outcomes in Treatment Naive Pediatric Crohn Disease

Haberman, Yael, Tickle, Timothy L., Dexheimer, Phillip J., Huttenhower, Curtis, Karns, Rebekah, Baldassano, Robert, Noe, Joshua D., Rosh, Joel R., Markowitz, James, Heyman, Melvin B., Griffiths, Anne

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 161 KB

english, 2014

8

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

Rooks, Michelle G, Veiga, Patrick, Wardwell-Scott, Leslie H, Tickle, Timothy, Segata, Nicola, Michaud, Monia, Gallini, Carey Ann, Beal, Chloé, van Hylckama-Vlieg, Johan ET, Ballal, Sonia A, Morgan, Xo

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 2.15 MB

english, 2014

9

Correlation Analysis of HOX, ErbB and IGFBP Family Gene Expression in Ovarian Cancer

Bahrani-Mostafavi, Zahra, Tickle, Timothy L., Zhang, Jian, Bennett, Kristen E., Vachris, Judith C., Spencer, Melanie D., Mostafavi, M. Taghi, Tait, David L.

Journal:

Cancer Investigation

Year:

2008

Language:

english

File:

PDF, 275 KB

english, 2008

10

Academics’ perceptions of the use and relevance of software in quantitative and financial disciplines

Kyng, Timothy, Tickle, Leonie, Wood, Leigh

Journal:

International Journal of Mathematical Education

Year:

2013

Language:

english

File:

PDF, 124 KB

english, 2013

11

Biogeography of the Intestinal Mucosal and Lumenal Microbiome in the Rhesus Macaque

Yasuda, Koji, Oh, Keunyoung, Ren, Boyu, Tickle, Timothy L., Franzosa, Eric A., Wachtman, Lynn M., Miller, Andrew D., Westmoreland, Susan V., Mansfield, Keith G., Vallender, Eric J., Miller, Gregory M.

Journal:

Cell Host & Microbe

Year:

2015

Language:

english

File:

PDF, 1.75 MB

english, 2015

12

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

Morgan, Xochitl C, Kabakchiev, Boyko, Waldron, Levi, Tyler, Andrea D, Tickle, Timothy L, Milgrom, Raquel, Stempak, Joanne M, Gevers, Dirk, Xavier, Ramnik J, Silverberg, Mark S, Huttenhower, Curtis

Journal:

Year:

2015

Language:

english

File:

PDF, 2.45 MB

english, 2015

13

Interaction of Grignard reagents with coumarins. Part I. Novel 1,4-addition

Tickle, Richard W., Melton, Timothy, Elvidge, John A.

Journal:

Journal of the Chemical Society Perkin Transactions 1

Year:

1974

Language:

english

File:

PDF, 687 KB

english, 1974

14

Erratum: MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Truong, Duy Tin, Franzosa, Eric A, Tickle, Timothy L, Scholz, Matthias, Weingart, George, Pasolli, Edoardo, Tett, Adrian, Huttenhower, Curtis, Segata, Nicola

Journal:

Year:

2015

Language:

english

File:

PDF, 88 KB

english, 2015

15

Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

Yassour, Moran, Lim, Mi Young, Yun, Hyun Sun, Tickle, Timothy L., Sung, Joohon, Song, Yun-Mi, Lee, Kayoung, Franzosa, Eric A., Morgan, Xochitl C., Gevers, Dirk, Lander, Eric S., Xavier, Ramnik J., Bir

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 2.53 MB

english, 2016

16

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

Bryant, Donald M., Johnson, Kimberly, DiTommaso, Tia, Tickle, Timothy, Couger, Matthew Brian, Payzin-Dogru, Duygu, Lee, Tae J., Leigh, Nicholas D., Kuo, Tzu-Hsing, Davis, Francis G., Bateman, Joel, Br

Journal:

Year:

2017

Language:

english

File:

PDF, 5.17 MB

english, 2017

17

Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer

Börnigen, Daniela, Ren, Boyu, Pickard, Robert, Li, Jingfeng, Ozer, Enver, Hartmann, Erica M., Xiao, Weihong, Tickle, Timothy, Rider, Jennifer, Gevers, Dirk, Franzosa, Eric A., Davey, Mary Ellen, Gilli

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.52 MB

english, 2017

18

ChemInform Abstract: INTERACTION OF GRIGNARD REAGENTS WITH COUMARINS PART 1, NOVEL 1,4-ADDITION

TICKLE, RICHARD W., MELTON, TIMOTHY, ELVIDGE, JOHN A.

Journal:

Chemischer Informationsdienst

Year:

1974

File:

PDF, 213 KB

1974

19

Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes

Lavaert, Marieke, Liang, Kai Ling, Vandamme, Niels, Park, Jong-Eun, Roels, Juliette, Kowalczyk, Monica S., Li, Bo, Ashenberg, Orr, Tabaka, Marcin, Dionne, Danielle, Tickle, Timothy L., Slyper, Michal,

Journal:

Year:

2020

File:

PDF, 11.60 MB

2020